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Showing posts with the label Neuro-Anatomy

Unveiling Hidden Neural Codes: SIMPL – A Scalable and Fast Approach for Optimizing Latent Variables and Tuning Curves in Neural Population Data

This research paper presents SIMPL (Scalable Iterative Maximization of Population-coded Latents), a novel, computationally efficient algorithm designed to refine the estimation of latent variables and tuning curves from neural population activity. Latent variables in neural data represent essential low-dimensional quantities encoding behavioral or cognitive states, which neuroscientists seek to identify to understand brain computations better. Background and Motivation Traditional approaches commonly assume the observed behavioral variable as the latent neural code. However, this assumption can lead to inaccuracies because neural activity sometimes encodes internal cognitive states differing subtly from observable behavior (e.g., anticipation, mental simulation). Existing latent variable models face challenges such as high computational cost, poor scalability to large datasets, limited expressiveness of tuning models, or difficulties interpreting complex neural network-based functio...

Pedunculopontine Nucleus (PPN)

The Pedunculopontine Nucleus (PPN) is a group of neurons located in the brainstem, specifically in the pontine region. Here is an overview of the Pedunculopontine Nucleus: 1.       Anatomy : o The PPN is situated in the rostral part of the brainstem, near the junction of the pons and midbrain. It is part of the reticular formation, a network of neurons involved in various physiological functions. o The PPN receives inputs from multiple brain regions, including the basal ganglia, thalamus, and cortex, and sends outputs to structures involved in motor control, arousal, and gait. 2.      Function : o Motor Control: The PPN is implicated in the regulation of motor functions, particularly in the control of posture, locomotion, and movement initiation. It is involved in coordinating rhythmic movements and adjusting gait patterns. o Arousal and Attention: The PPN is also associated with arousal, wakefulness, and attention. It plays a role in regulat...

Pontomedullary Reticular Formation (PmRF)

The Pontomedullary Reticular Formation (PMRF) is a complex network of neurons located in the brainstem, specifically in the pontine and medullary regions. Here is an overview of the PMRF: 1.       Anatomy : o The PMRF is part of the reticular formation, a network of interconnected nuclei and pathways that extends throughout the brainstem. It is situated in the pontine and medullary regions, which are important for regulating various physiological functions. o The PMRF is involved in the modulation of motor functions, sensory processing, cardiovascular control, respiratory rhythm, and the sleep-wake cycle. 2.      Function : o Motor Control: The PMRF plays a crucial role in the coordination of voluntary movements and postural control. It receives inputs from higher brain centers and projects to the spinal cord and cranial nerve nuclei to influence motor output. o   Sensory Processing: The PMRF is involved in sensory integration and modula...