Skip to main content

Posts

Unveiling Hidden Neural Codes: SIMPL – A Scalable and Fast Approach for Optimizing Latent Variables and Tuning Curves in Neural Population Data

This research paper presents SIMPL (Scalable Iterative Maximization of Population-coded Latents), a novel, computationally efficient algorithm designed to refine the estimation of latent variables and tuning curves from neural population activity. Latent variables in neural data represent essential low-dimensional quantities encoding behavioral or cognitive states, which neuroscientists seek to identify to understand brain computations better. Background and Motivation Traditional approaches commonly assume the observed behavioral variable as the latent neural code. However, this assumption can lead to inaccuracies because neural activity sometimes encodes internal cognitive states differing subtly from observable behavior (e.g., anticipation, mental simulation). Existing latent variable models face challenges such as high computational cost, poor scalability to large datasets, limited expressiveness of tuning models, or difficulties interpreting complex neural network-based functio...

Lineage Analysis of Glial Cells in The Intact and Injured Adult Mouse CNS

Lineage analysis of glial cells in the intact and injured adult mouse central nervous system (CNS) involves tracking the origin, differentiation, and fate of glial cell populations under normal conditions and in response to neural injury. Here are some key points related to lineage analysis of glial cells in the intact and injured adult mouse CNS: 1.       Heterogeneity of Glial Cell Populations : o Astrocytes and Oligodendrocytes : The CNS contains diverse populations of glial cells, including astrocytes and oligodendrocytes, which play crucial roles in maintaining homeostasis, supporting neuronal function, and responding to injury or disease . o   Progenitor Cells : Glial progenitor cells, such as NG2 glia, represent a dynamic cell population with the capacity to differentiate into mature glial subtypes and contribute to tissue repair and regeneration in the adult CNS . 2.      Lineage Tracing Techniques : o Genetic Tools : L...

Split-CRE Mediated Analysis of a Progenitor Cell Population Activated by Brain Lesions

Split-Cre mediated analysis of a progenitor cell population activated by brain lesions involves a sophisticated genetic approach to track and manipulate specific cell populations in response to injury. Here are some key points related to Split-Cre mediated analysis of progenitor cells activated by brain lesions: 1.       Principle of Split-Cre System : o   Split-Cre Recombinase : The Split-Cre system involves dividing the Cre recombinase enzyme into two inactive fragments that can reconstitute functional Cre activity when brought together in proximity, allowing for spatial and temporal control over genetic recombination events. o   Cell-Specific Activation : By expressing one Cre fragment under the control of a cell type-specific promoter and the complementary fragment in response to injury signals or lesion-induced factors, the Split-Cre system enables the selective activation of Cre recombinase activity in the targeted progenitor cell population foll...

Age-dependent changes in fate and fate potential of polydendrocytes (NG2 glial Cells)

Age-dependent changes in the fate and fate potential of polydendrocytes, also known as NG2 glial cells, highlight the dynamic nature of these progenitor cells in the central nervous system. Here are some key points related to age-dependent alterations in the fate and fate potential of polydendrocytes: 1.       Developmental Plasticity : o Early Development : During early development, NG2 glial cells exhibit high proliferative capacity and serve as oligodendrocyte progenitor cells (OPCs) responsible for generating myelinating oligodendrocytes in the CNS. o Fate Potential : Polydendrocytes have been shown to possess multipotency, with the ability to differentiate not only into oligodendrocytes but also into astrocytes and possibly neurons under certain conditions, indicating their potential role beyond myelination. 2.      Age-Dependent Changes : o Reduced Proliferation : With advancing age, the proliferative capacity of NG2 glial cells tends t...

Advanced Strategies for Fate Mapping in Vivo

Fate mapping in vivo is a powerful technique used to track the developmental origins and lineage relationships of cells within complex tissues and organs. Advanced strategies for fate mapping in vivo involve sophisticated genetic tools and imaging technologies that enable precise and dynamic visualization of cell fate decisions and lineage trajectories. Here are some key advanced strategies for fate mapping in vivo: 1.       Genetic Lineage Tracing : o     Cre-Lox Recombination : Utilizing Cre-Lox recombination systems allows for cell type-specific labeling and tracking of cell lineages based on the expression of Cre recombinase in specific cell populations. This technique enables spatial and temporal control over lineage tracing events. o     Inducible Systems : Incorporating inducible Cre systems, such as tamoxifen-inducible CreERT2, enables temporal control over lineage tracing experiments, allowing researchers to activate geneti...

PINK1 And Autophagy in Mitochondrial and Neuritic Quality Control

PINK1 (PTEN-induced putative kinase 1) plays a crucial role in the regulation of autophagy, particularly in mitochondrial and neuritic quality control mechanisms. Here are the key points related to PINK1 and autophagy in the context of mitochondrial and neuritic quality control: 1.       PINK1 and Autophagy : o    Mitophagy Regulation : PINK1 is involved in the regulation of mitophagy, a selective form of autophagy that targets damaged or dysfunctional mitochondria for degradation. PINK1 accumulates on depolarized mitochondria and recruits Parkin, leading to the ubiquitination of mitochondrial proteins and the initiation of mitophagy. o     Quality Control Mechanisms : PINK1-mediated mitophagy serves as a quality control mechanism to maintain mitochondrial homeostasis by eliminating damaged mitochondria and preventing the accumulation of dysfunctional organelles that could lead to oxidative stress and cellular damage. o   ...