When Geometry, Energy, Artificial Intelligence and Neuroscience Converge Modern Artificial Intelligence is rapidly moving beyond the idea that learning simply means minimizing an error function. Increasingly, researchers are asking a deeper question: what is the structure of the space in which learning takes place? This question becomes particularly important when the system being modelled is constrained, nonlinear, dynamic, or governed by physical principles. A recent work titled “Energy Manifold Natural Gradient Descent: Riemannian Optimization for Neural PDE Solvers” , by Zhangyong Liang and Huanhuan Gao, introduces Energy Manifold Natural Gradient Descent (EMNGD) , a mathematical framework that extends energy-based natural-gradient optimization from unconstrained Euclidean parameter spaces to constrained Riemannian parameter manifolds . At its core, the framework proposes a simple but powerful principle: An optimization algorithm should not only determine how to reduce error; it sh...
1. What is Uncertainty in
Classification?
- Uncertainty
refers to the model’s confidence
or doubt in its predictions.
- Quantifying uncertainty is important to understand how reliable each prediction
is.
- In multiclass classification, uncertainty estimates provide probabilities over multiple classes, reflecting how sure the model is about each possible class.
2. Methods to Estimate Uncertainty in Multiclass Classification
Most multiclass classifiers provide methods such as:
- predict_proba:
Returns a probability distribution across all classes.
- decision_function:
Returns scores or margins for each class (sometimes called raw or
uncalibrated confidence scores).
- The probability distribution from predict_proba captures the uncertainty by assigning a probability to each class.
3. Shape and Interpretation of
predict_proba in Multiclass
- Output shape: (n_samples,
n_classes)
- Each row corresponds to the probabilities of all classes
for a single data sample.
- Probabilities for each sample sum up to 1.
- Example:
For a 3-class problem, the output
might look like:
[[0.1 0.7 0.2],[0.8 0.1 0.1],[0.2 0.5 0.3]]This means the model predicts the second class with the highest certainty for the first sample, the first class for the second sample, and the second class again (but with less confidence) for the third sample.
4. Using predict_proba in
Multiclass — Example on the Iris Dataset
- The Iris dataset has 3 classes.
- Using a model (e.g., logistic regression or gradient
boosting), one obtains:
predicted_probabilities = model.predict_proba(X_test)print(predicted_probabilities.shape) # (n_samples, 3)print(predicted_probabilities[:5])- This tells us how confident the model is about each class
for every test point.
- The highest probability in a row is usually the predicted class (via argmax).
5. Visualization of Uncertainty
- Decision boundaries around different classes can be visualized.
- Probabilities reveal “soft boundaries” and small areas of
uncertainty
where probabilities are similar across classes.
- Figure 2-56 demonstrates how uncertainty is visible in certain regions near the decision boundary.
6. Calibration of Multiclass
Probability Estimates
- Similar to binary classification, calibration indicates how
well predicted probabilities reflect actual outcomes.
- A perfectly calibrated model predicts class probabilities
such that when it says “class 1 with 70% probability”, that class is
indeed correct 70% of the time.
- Poor calibration may result in overconfident or
underconfident probability estimates in multiclass settings.
- Calibration techniques can be applied for multiclass as well.
7. Practical Uses of Uncertainty
in Multiclass
- Thresholding: In
some applications, you might only classify a sample if the predicted
probability for the predicted class exceeds a certain threshold.
- Reject option:
Skip or ask for human review when uncertainty is high (all probabilities
close to uniform).
- Active learning:
Prioritize samples with high uncertainty for labeling.
- Ranking: Use probabilities to rank samples by certainty or risk.
8. Model Specific Notes
- Different models have varying quality of uncertainty
estimates:
- Gradient boosting, random forests, and logistic regression often
produce reasonable probability estimates.
- Fully-grown decision trees are less reliable for
uncertainty due to extreme (0 or 1) predicted probabilities.
- Consider model calibration and complexity to get
realistic uncertainty estimates.

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