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Unveiling Hidden Neural Codes: SIMPL – A Scalable and Fast Approach for Optimizing Latent Variables and Tuning Curves in Neural Population Data

Dr. Rishabh Pathak
This research paper presents SIMPL (Scalable Iterative Maximization of Population-coded Latents), a novel, computationally efficient algorithm designed to refine the estimation of latent variables and tuning curves from neural population activity. Latent variables in neural data represent essential low-dimensional quantities encoding behavioral or cognitive states, which neuroscientists seek to identify to understand brain computations better. Background and Motivation Traditional approaches commonly assume the observed behavioral variable as the latent neural code. However, this assumption can lead to inaccuracies because neural activity sometimes encodes internal cognitive states differing subtly from observable behavior (e.g., anticipation, mental simulation). Existing latent variable models face challenges such as high computational cost, poor scalability to large datasets, limited expressiveness of tuning models, or difficulties interpreting complex neural network-based functio...
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Probabilistic interpretation

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Dr. Rishabh Pathak

The probabilistic interpretation in machine learning and statistics refers to understanding algorithms and models in terms of probability theory, which offers a principled framework for reasoning under uncertainty and making predictions.

Overview of Probabilistic Interpretation

  1. Connection Between Likelihood and Cost Function:

A common example is the interpretation of least-squares regression. Under specific probabilistic assumptions about the data, minimizing the least-squares cost corresponds exactly to maximizing the likelihood of the observed data.

  • Suppose the data (x(i),y(i)) are generated according to the model:

y(i)=θTx(i)+ϵ(i),

where ϵ(i)∼N(0,σ2) are independent Gaussian noise terms.

  • The likelihood of the dataset under parameters θ is:

p(y(i)∣x(i);θ)=2π​σ1​exp(−2σ2(y(i)−θTx(i))2​).

  • Maximizing this likelihood (or equivalently, the log-likelihood) over all data points is:

θMLE​=argmaxθ​∑i=1n​logp(y(i)∣x(i);θ),

which simplifies to minimizing the squared error loss:

argminθ​21​∑i=1n​(y(i)−θTx(i))2.

Hence, least-squares regression corresponds to the Maximum Likelihood Estimation (MLE) under Gaussian noise assumptions.

  1. Bayesian Perspective:

Going beyond MLE, Bayesian statistics treats model parameters θ as random variables with a prior distribution p(θ). This leads to the posterior distribution over parameters given data S={(x(i),y(i))}i=1n​:

p(θ∣S)=p(S)p(S∣θ)p(θ)​=∫θ​(∏i=1n​p(y(i)∣x(i),θ)p(θ))dθ(∏i=1n​p(y(i)∣x(i),θ))p(θ)​

where the posterior incorporates both the likelihood and prior belief about θ. This approach regularizes the problem, reduces overfitting, and allows for uncertainty quantification.

  1. Summary :
  • The equivalence between least squares and MLE is shown under Gaussian noise assumptions.
  • Bayesian view treats parameters as random variables with priors, leading to posterior inference that naturally incorporates regularization effects.
  • Such probabilistic interpretations provide principled foundations for many classical and modern machine learning methods, like logistic regression and generative models.

Additional Notes:

  • Probabilistic interpretations enable the design of new models and cost functions by modeling p(y∣x;θ) in flexible ways.
  • They facilitate working with uncertainty, making predictions that include confidence estimates.
  • Extensions include generalized linear models and generative learning algorithms, which build on these ideas. 

 

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