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Unveiling Hidden Neural Codes: SIMPL – A Scalable and Fast Approach for Optimizing Latent Variables and Tuning Curves in Neural Population Data

Dr. Rishabh Pathak
This research paper presents SIMPL (Scalable Iterative Maximization of Population-coded Latents), a novel, computationally efficient algorithm designed to refine the estimation of latent variables and tuning curves from neural population activity. Latent variables in neural data represent essential low-dimensional quantities encoding behavioral or cognitive states, which neuroscientists seek to identify to understand brain computations better. Background and Motivation Traditional approaches commonly assume the observed behavioral variable as the latent neural code. However, this assumption can lead to inaccuracies because neural activity sometimes encodes internal cognitive states differing subtly from observable behavior (e.g., anticipation, mental simulation). Existing latent variable models face challenges such as high computational cost, poor scalability to large datasets, limited expressiveness of tuning models, or difficulties interpreting complex neural network-based functio...
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What role do physical forces play in translating cellular mechanisms into the intricate structure of the human brain?

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Dr. Rishabh Pathak

Physical forces play a crucial role in translating cellular mechanisms into the intricate structure of the human brain. Here is an explanation of how physical forces influence brain development:


1.     Regulation of Pattern Selection: Physical forces, such as mechanical stress and tension, regulate pattern selection during brain development. These forces influence the growth and organization of neuronal structures, guiding the formation of neural circuits and brain regions. By exerting mechanical forces on developing neurons, the brain can achieve specific patterns of connectivity and organization.


2.     Surface Morphogenesis: Physical forces contribute to surface morphogenesis, including the folding of the cerebral cortex. The mechanical interactions between neurons, glial cells, and the extracellular matrix play a role in shaping the convolutions and gyri of the brain. Differential growth and tension within the brain tissue lead to the characteristic folds and wrinkles observed in the human cortex.


3.     Cellular Migration and Connectivity: Physical forces generated during cellular migration and connectivity impact the wiring of the brain. Neuronal migration is guided by mechanical cues, such as substrate stiffness and topographical features, which influence the positioning of neurons within the developing brain. Additionally, forces generated during synaptogenesis and synaptic pruning shape the formation and elimination of neuronal connections, sculpting the neural network.


4.     Pathological Conditions: Disruptions in physical forces can lead to abnormal brain development and neurological disorders. Conditions such as lissencephaly, polymicrogyria, microcephaly, and megalencephaly are associated with alterations in mechanical forces during neurodevelopment. Computational models of differential growth can simulate these pathologies, highlighting the impact of physical forces on brain structure.


In summary, physical forces act as regulators in translating cellular mechanisms into the complex structure of the human brain. By understanding the role of mechanical forces in brain development, researchers can gain insights into normal brain function, pathological conditions, and potential therapeutic interventions.

 

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